Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_2461Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: amt:Amet_0544 helix-turn-helix-domain containing protein, AraC type. (277 aa)    
Predicted Functional Partners:
Cphy_0385
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bcl:ABC1143 transcriptional regulator, AraC/XylS family.
  
     0.771
Cphy_1706
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: csc:Csac_2727 helix-turn-helix-domain containing protein, AraC type.
  
     0.769
Cphy_1546
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pdi:BDI_1324 transcriptional regulator.
  
     0.766
Cphy_0342
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bha:BH0483 transcriptional regulator (AraC/XylS family).
  
     0.754
Cphy_2187
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: csc:Csac_2727 helix-turn-helix-domain containing protein, AraC type.
  
     0.740
Cphy_1168
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_2943 helix-turn-helix-domain containing protein, AraC type.
  
     0.739
Cphy_1472
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_3990 transcription activator, effector binding.
  
     0.709
Cphy_1683
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: amt:Amet_1428 helix-turn-helix-domain containing protein, AraC type.
  
     0.700
Cphy_3132
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: dsy:DSY0076 hypothetical protein.
  
     0.609
Cphy_2460
PFAM: multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_0545 MATE efflux family protein.
 
     0.434
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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