STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2464PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_1165 hypothetical protein. (295 aa)    
Predicted Functional Partners:
Cphy_2465
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_1164 hypothetical protein.
 
 0.982
Cphy_2466
PFAM: extracellular solute-binding protein family 1; KEGG: llc:LACR_1435 ABC-type sugar transport system, periplasmic component.
 
 
 0.885
Cphy_1014
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE2416 ABC-type sugar transport systems, permease components.
  
   0.841
Cphy_0527
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120664 putative permease component of ABC transporter.
 
   0.839
Cphy_3032
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2233 ABC transporter, permease protein.
  
   0.839
Cphy_0290
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2233 ABC transporter, permease protein.
 
   0.838
Cphy_1390
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lin:lin0218 similar to sugar ABC transporters, permease proteins.
 
   0.837
Cphy_3316
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1726 ABC transporter permease protein.
  
   0.835
Cphy_3611
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein.
 
 
 0.832
Cphy_0593
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1214 sugar ABC transporter permease.
  
   0.831
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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