STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2466PFAM: extracellular solute-binding protein family 1; KEGG: llc:LACR_1435 ABC-type sugar transport system, periplasmic component. (473 aa)    
Predicted Functional Partners:
Cphy_2465
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_1164 hypothetical protein.
 
   0.899
Cphy_2464
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_1165 hypothetical protein.
 
 
 0.885
Cphy_0857
Cellobiose phosphorylase-like protein; KEGG: bhe:BH00920 cyclic beta 1-2 glucan synthetase.
 
   
 0.656
Cphy_2467
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bha:BH1928 transcriptional regulator (LacI family).
 
    0.651
Cphy_1929
Glycosyltransferase 36; PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: csc:Csac_1090 glycosyltransferase 36.
 
   
 0.610
Cphy_3510
PFAM: Ig domain protein group 2 domain protein; KEGG: bat:BAS0841 S-layer protein SAP.
  
   
 0.577
Cphy_3207
PFAM: glycoside hydrolase family 8; KEGG: bha:BH2105 xylanase Y.
  
  
 0.550
Cphy_0430
Glycosyltransferase 36; PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: cth:Cthe_0275 glycosyltransferase 36.
 
   
 0.520
Cphy_2144
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tde:TDE0182 ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.513
Cphy_3611
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein.
  
 
 0.513
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.