STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2486PFAM: protein of unknown function RIO1; protein kinase; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; KEGG: csc:Csac_2076 protein kinase. (715 aa)    
Predicted Functional Partners:
Cphy_2487
PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: cth:Cthe_0573 protein serine/threonine phosphatases.
 
 
 0.997
Cphy_0040
PFAM: Forkhead-associated protein; KEGG: cth:Cthe_1334 FHA domain containing protein.
 
 
 
 0.962
Cphy_0217
Hypothetical protein.
   
 
 0.957
rsgA-2
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
  
  
 0.862
Cphy_1337
PFAM: cell cycle protein; penicillin-binding protein transpeptidase; KEGG: ckl:CKL_3568 predicted peptidoglycan synthetase.
 
 
 0.814
Cphy_1213
Capsular exopolysaccharide family; KEGG: cth:Cthe_1363 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
   
 
 0.813
Cphy_2359
PFAM: DivIVA family protein; KEGG: csc:Csac_1911 DivIVA family protein.
 
 
 0.781
rlmN
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
  
  
 0.719
murE
UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
  
  
 0.705
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
 
   
 0.689
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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