STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2506KEGG: btl:BALH_1130 hypothetical protein. (249 aa)    
Predicted Functional Partners:
Cphy_3708
PFAM: protein of unknown function DUF58; KEGG: cth:Cthe_1055 protein of unknown function DUF58.
  
     0.552
Cphy_0953
KEGG: cdf:CD0593 hypothetical protein.
  
     0.505
Cphy_1848
KEGG: cbf:CLI_2295 transcriptional regulator, MerR family.
  
     0.434
Cphy_0279
KEGG: cbe:Cbei_4038 hypothetical protein.
  
     0.417
Cphy_2667
PFAM: regulatory protein TetR; KEGG: cbh:CLC_0816 putative transcriptional regulator.
  
     0.411
Cphy_1899
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cdf:CD3121 putative flavodoxin.
 
    0.403
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.