Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_2524TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase; KEGG: pth:PTH_1166 hypothetical protein. (322 aa)    
Predicted Functional Partners:
Cphy_2523
Hypothetical protein; KEGG: cth:Cthe_0844 stage III sporulation protein spoIIIAB.
 
  
 0.997
Cphy_2518
Hypothetical protein; KEGG: cth:Cthe_0839 stage III sporulation protein AG.
 
  
 0.976
Cphy_2521
TIGRFAM: stage III sporulation protein AD; PFAM: Sporulation stage III protein AD; KEGG: amt:Amet_2495 sporulation stage III, protein AD.
 
  
 0.969
Cphy_2520
KEGG: amt:Amet_2496 sporulation stage III, protein AE.
 
  
 0.962
Cphy_2517
KEGG: cth:Cthe_0838 hypothetical protein.
 
  
 0.952
Cphy_2522
KEGG: cdf:CD1194 stage III sporulation protein AC.
 
  
 0.948
Cphy_2385
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.881
Cphy_2470
Peptidase U4 sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
  
 0.868
Cphy_0210
TIGRFAM: sporulation transcriptional regulator SpoIIID; KEGG: cth:Cthe_2618 stage III sporulation protein D, SpoIIID.
  
   
 0.866
Cphy_2316
PFAM: Stage II sporulation P family protein; KEGG: cth:Cthe_1328 stage II sporulation P.
  
   
 0.857
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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