Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Cphy_2588KEGG: cac:CAC3086 protein containing cell adhesion domain. (195 aa)    
Predicted Functional Partners:
Cphy_3430
PFAM: Ig domain protein group 2 domain protein; KEGG: cac:CAC2107 contains cell adhesion domain.
  
     0.772
Cphy_3475
PFAM: Ig domain protein group 2 domain protein; KEGG: dsy:DSY0726 hypothetical protein.
  
     0.765
Cphy_3510
PFAM: Ig domain protein group 2 domain protein; KEGG: bat:BAS0841 S-layer protein SAP.
  
     0.751
Cphy_2596
PFAM: Ig domain protein group 2 domain protein; KEGG: cth:Cthe_0056 Ig-like, group 2.
  
     0.746
Cphy_3896
Hypothetical protein; KEGG: tva:TVAG_244940 viral A-type inclusion protein, putative Pfam: DUF2013 Spectrin DUF1945 EzrA Vicilin_N Myosin_tail_1 ATG16 HrpB7 Tektin DUF869 KAR9 Pox_A_type_inc Prefoldin_2 Rad50_zn_hook Hemerythrin Filament Microtub_assoc SF-assemblin Apolipoprotein MpPF2 BRE1 Phage_GP20 PROSITE: GLU_RICH.
  
     0.631
Cphy_0935
HD superfamily phosphohydrolase-like protein; KEGG: abu:Abu_1539 conserved hypothetical protein.
  
     0.613
Cphy_2842
Hypothetical protein; KEGG: ehi:82.t00025 viral A-type inclusion protein repeat, putative Pfam: Nha1_C DUF148 ERM Prefoldin_2 WXG100 Vicilin_N TBPIP Myosin_tail_1 Filament YscO Bacillus_HBL EzrA DUF948 Rab5-bind Laminin_I MpPF2 Vps51 MSG Spectrin LMP PROSITE: GLU_RICH LYS_RICH.
  
     0.596
Cphy_3734
KEGG: tte:TTE0157 hypothetical protein.
  
     0.538
Cphy_0075
KEGG: efa:EF0300 hypothetical protein.
  
     0.521
Cphy_2589
PFAM: protein of unknown function DUF214; KEGG: efa:EF1321 permease domain protein.
  
    0.517
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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