Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2590PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC0822 ABC transporter, ATP-binding protein. (234 aa)    
Predicted Functional Partners:
Cphy_2589
PFAM: protein of unknown function DUF214; KEGG: efa:EF1321 permease domain protein.
 
 
 0.964
Cphy_2079
PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_0540 protein of unknown function DUF214.
 
 
 0.915
Cphy_1362
PFAM: protein of unknown function DUF214; KEGG: lmf:LMOf2365_1233 ABC transporter, permease protein.
 
  
 0.829
Cphy_2429
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0397 ABC transporter related protein.
 
     
0.651
Cphy_3379
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1825 ABC-type multidrug/protein/lipid transport system, ATPase.
 
     
0.563
Cphy_1244
PFAM: protein of unknown function DUF214; KEGG: cdf:CD2533 ABC transporter, permease protein.
  
   0.542
Cphy_2339
PFAM: protein of unknown function DUF214; KEGG: btk:BT9727_3141 ABC transporter, permease.
  
   0.507
Cphy_1978
PFAM: protein of unknown function DUF214; KEGG: cbf:CLI_1431 ABC transporter, permease protein.
  
   0.483
Cphy_0442
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0836 ABC-type multidrug/protein/lipid transport system, ATPase component.
 
     
0.479
Cphy_3331
PFAM: protein of unknown function DUF214; KEGG: csc:Csac_0506 protein of unknown function DUF214.
  
 
 0.447
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.