STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2593PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: amt:Amet_2523 tyrosine recombinase XerD; Belongs to the 'phage' integrase family. (291 aa)    
Predicted Functional Partners:
Cphy_2757
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: cth:Cthe_3039 cell divisionFtsK/SpoIIIE.
 
   
 0.575
Cphy_3934
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cbh:CLC_3637 stage 0 sporulation protein J; Belongs to the ParB family.
  
  
 0.531
Cphy_2594
PFAM: protein of unknown function DUF95 transmembrane; KEGG: bce:BC4092 stage II sporulation protein M.
  
    0.485
Cphy_0248
KEGG: tte:TTE0490 predicted amidophosphoribosyltransferases.
   
    0.480
Cphy_2539
Prephenate dehydrogenase; PFAM: amino acid-binding ACT domain protein; Prephenate dehydrogenase; KEGG: cth:Cthe_1796 prephenate dehydrogenase.
  
    0.442
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
 
  
 0.428
Cphy_3924
PFAM: protein of unknown function DUF159; KEGG: csc:Csac_0196 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family.
   
  
 0.428
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
  
 0.427
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
   
    0.424
Cphy_3935
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: tte:TTE2791 ATPases involved in chromosome partitioning.
 
   
 0.417
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.