Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2594PFAM: protein of unknown function DUF95 transmembrane; KEGG: bce:BC4092 stage II sporulation protein M. (188 aa)    
Predicted Functional Partners:
Cphy_2595
PFAM: NUDIX hydrolase; KEGG: tte:TTE1310 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
       0.572
Cphy_2593
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: amt:Amet_2523 tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
    0.486
Cphy_2523
Hypothetical protein; KEGG: cth:Cthe_0844 stage III sporulation protein spoIIIAB.
   
  
 0.453
Cphy_3907
PFAM: nucleoside recognition domain protein; KEGG: cth:Cthe_2098 nucleoside recognition.
   
  
 0.434
Cphy_2522
KEGG: cdf:CD1194 stage III sporulation protein AC.
   
  
 0.416
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.