STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2596PFAM: Ig domain protein group 2 domain protein; KEGG: cth:Cthe_0056 Ig-like, group 2. (390 aa)    
Predicted Functional Partners:
Cphy_2588
KEGG: cac:CAC3086 protein containing cell adhesion domain.
  
     0.746
Cphy_3430
PFAM: Ig domain protein group 2 domain protein; KEGG: cac:CAC2107 contains cell adhesion domain.
  
     0.740
Cphy_3510
PFAM: Ig domain protein group 2 domain protein; KEGG: bat:BAS0841 S-layer protein SAP.
  
     0.528
Cphy_2597
Transposase; KEGG: ckl:CKL_2277 predicted transposase.
       0.489
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.