Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_2614PFAM: nitrogen regulatory protein P-II; KEGG: amt:Amet_3184 nitrogen regulatory protein P-II. (221 aa)    
Predicted Functional Partners:
Cphy_2615
PFAM: protein of unknown function DUF1538; KEGG: cbo:CBO2972 membrane protein.
 
     0.950
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
    
 
 0.832
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
  
 0.616
Cphy_0628
KEGG: csc:Csac_1211 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp.
  
 
 0.555
Cphy_1707
KEGG: ani:AN4010.2 hypothetical protein.
   
 
 0.547
Cphy_3350
KEGG: cac:CAC1655 bifunctional enzyme phosphoribosylformylglycinamidine (FGAM) synthase (synthetase domain/glutamine amidotransferase domain); TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein.
     
 0.508
Cphy_3870
KEGG: dsy:DSY1488 hypothetical protein.
  
 
 
 0.484
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
  
 0.459
Cphy_2074
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: amt:Amet_1217 haloacid dehalogenase domain protein hydrolase.
  
   
 0.417
Cphy_0925
KEGG: bba:Bd3697 hypothetical protein.
    
 
 0.408
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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