STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2637PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cpf:CPF_0900 ethanolamine utilization protein EutN. (91 aa)    
Predicted Functional Partners:
Cphy_2636
PFAM: microcompartments protein; KEGG: cdf:CD1923 putative ethanolamine/propanediol utilization protein.
 
 
 0.930
Cphy_2641
PFAM: microcompartments protein; KEGG: efa:EF1623 microcompartment protein.
 
 
 0.875
Cphy_2643
PFAM: microcompartments protein; KEGG: ckl:CKL_0845 predicted microcompartment shellprotein.
 
 
 0.875
Cphy_1427
PFAM: microcompartments protein; KEGG: cbh:CLC_2051 bacterial microcompartments family protein.
 
 
 0.850
Cphy_1182
PFAM: microcompartments protein; KEGG: ckl:CKL_1072 predicted microcompartment protein.
 
 
 0.844
Cphy_1411
PFAM: microcompartments protein; KEGG: cbf:CLI_2149 bacterial microcompartments family protein.
 
 
 0.844
Cphy_1430
PFAM: microcompartments protein; KEGG: cbf:CLI_2149 bacterial microcompartments family protein.
 
 
 0.843
Cphy_1180
PFAM: microcompartments protein; KEGG: spc:Sputcn32_0210 microcompartments protein.
 
 
 0.840
Cphy_1414
PFAM: microcompartments protein; KEGG: cbf:CLI_2164 bacterial microcompartments family protein.
 
 
 0.839
Cphy_1415
PFAM: microcompartments protein; KEGG: amt:Amet_3837 microcompartments protein.
 
 
 0.839
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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