STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2667PFAM: regulatory protein TetR; KEGG: cbh:CLC_0816 putative transcriptional regulator. (192 aa)    
Predicted Functional Partners:
Cphy_2668
KEGG: cbh:CLC_0817 hypothetical protein.
       0.746
Cphy_1870
KEGG: dsy:DSY4364 hypothetical protein.
  
   
 0.514
Cphy_0953
KEGG: cdf:CD0593 hypothetical protein.
  
     0.442
Cphy_2837
TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cth:Cthe_1329 putative CoA-substrate-specific enzyme activase.
 
   
 0.436
Cphy_1633
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: ckl:CKL_0067 hypothetical protein.
  
     0.414
Cphy_2506
KEGG: btl:BALH_1130 hypothetical protein.
  
     0.411
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.