STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2670PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_2512 ABC transporter related. (251 aa)    
Predicted Functional Partners:
Cphy_2671
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ste:STER_1541 ABC-type amino acid transport system, permease component.
 
 0.999
Cphy_2672
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgo:SGO_0985 amino acid ABC transporter, permease protein SP0711.
 
 0.998
Cphy_0848
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shw:Sputw3181_0917 polar amino acid ABC transporter, inner membrane subunit.
 
 0.977
Cphy_2669
PFAM: extracellular solute-binding protein family 3; KEGG: sgo:SGO_0982 amino acid ABC transporter, amino acid-binding protein.
 
 
 0.939
Cphy_0847
ABC-type amino acid transport/signal transduction systems periplasmic component/domain-like protein; KEGG: cth:Cthe_2278 extracellular solute-binding protein, family 3.
 
 
 0.903
Cphy_0808
KEGG: cpr:CPR_2255 oligopeptide ABC transporter, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
   
0.842
Cphy_0018
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_2793 ABC transporter related.
 
     
0.709
Cphy_3379
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1825 ABC-type multidrug/protein/lipid transport system, ATPase.
 
     
0.694
Cphy_3380
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC2393 uncharacterized ABC transporter, ATPase component.
 
     
0.641
Cphy_1237
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_3147 ABC transporter related protein.
 
     
0.613
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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