STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2674KEGG: tde:TDE0486 membrane protein, putative. (267 aa)    
Predicted Functional Partners:
Cphy_2673
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0487 ABC transporter, ATP-binding protein.
 
  
 0.962
Cphy_2675
PFAM: protein of unknown function DUF990; KEGG: tde:TDE0485 membrane protein, putative.
 
  
 0.896
Cphy_3780
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0487 ABC transporter, ATP-binding protein.
 
  
 0.840
Cphy_0978
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH2664 ABC transporter ATP-binding protein.
 
  
 0.839
Cphy_1128
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH1197 ABC transporter ATP-binding protein.
 
  
 0.837
Cphy_3863
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1189 ABC transporter related protein.
 
  
 0.837
Cphy_0980
PFAM: protein of unknown function DUF990; KEGG: gtn:GTNG_0486 ABC transporter (permease).
 
  
 0.806
Cphy_3778
PFAM: protein of unknown function DUF990; KEGG: tde:TDE0485 membrane protein, putative.
 
  
 0.806
Cphy_1130
PFAM: protein of unknown function DUF990; KEGG: sth:STH1199 hypothetical protein.
 
  
 0.800
Cphy_3864
PFAM: protein of unknown function DUF990; KEGG: cth:Cthe_1188 protein of unknown function DUF990.
 
  
 0.797
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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