STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2692PFAM: type IV pilus assembly PilZ; KEGG: csc:Csac_1280 type IV pilus assembly PilZ. (253 aa)    
Predicted Functional Partners:
Cphy_2694
PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; KEGG: cth:Cthe_0486 GTP-binding signal recognition particle SRP54, G-domain.
 
  
 0.939
Cphy_2700
KEGG: tte:TTE1427 flagellar protein FliO/FliZ.
 
    0.930
Cphy_0304
KEGG: cth:Cthe_2245 hypothetical protein.
 
  
 0.928
Cphy_0312
Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
 
  
 0.921
Cphy_0303
PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: csc:Csac_1662 anti-sigma-28 factor, FlgM.
 
  
 0.915
Cphy_2702
CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 CheC, inhibitor of MCP methylation.
 
  
 0.902
Cphy_3849
Hypothetical protein; KEGG: lbl:LBL_1556 endoflagellar biosynthesis chaperone.
 
  
 0.898
Cphy_2705
PFAM: OmpA/MotB domain protein; KEGG: dsy:DSY0295 hypothetical protein.
 
 
 0.870
Cphy_2693
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cth:Cthe_0487 cobyrinic acid a,c-diamide synthase.
 
    0.861
Cphy_2715
Hypothetical protein; KEGG: cth:Cthe_0467 flagellar biosynthesis/type III secretory pathway protein-like protein.
 
  
 0.856
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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