STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2730PFAM: polysaccharide deacetylase; KEGG: cac:CAC0358 predicted xylanase/chitin deacetylase. (274 aa)    
Predicted Functional Partners:
Cphy_2660
PFAM: Aldose 1-epimerase; KEGG: dge:Dgeo_2023 aldose 1-epimerase.
   
    0.835
Cphy_2269
KEGG: csc:Csac_2415 hypothetical protein.
  
     0.741
Cphy_2729
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cbe:Cbei_0450 xylose isomerase domain protein TIM barrel.
 
     0.723
Cphy_2274
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_2419 extracellular solute-binding protein, family 1.
  
     0.703
Cphy_2265
PFAM: extracellular solute-binding protein family 1; KEGG: cth:Cthe_1046 extracellular solute-binding protein, family 1.
  
     0.668
Cphy_2733
PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3316 extracellular solute-binding protein, family 1.
 
     0.588
Cphy_2273
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2418 binding-protein-dependent transport systems inner membrane component.
  
     0.514
Cphy_0531
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: cth:Cthe_1271 carbohydrate binding family 6; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.509
Cphy_1549
Hypothetical protein; KEGG: efa:EF1234 ABC transporter, substrate-binding protein, putative.
 
     0.503
Cphy_1907
PFAM: major facilitator superfamily MFS_1; KEGG: csc:Csac_2119 major facilitator superfamily MFS_1.
 
     0.500
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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