STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2741PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: cbe:Cbei_1833 mannitol dehydrogenase, C-terminal domain. (485 aa)    
Predicted Functional Partners:
Cphy_2740
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: bth:BT_0486 altronate hydrolase.
 
 0.995
uxaC
PFAM: Glucuronate isomerase; KEGG: cbe:Cbei_1832 glucuronate isomerase.
 
 
 0.989
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
 
  
 0.809
Cphy_2739
PFAM: PfkB domain protein; KEGG: bth:BT_0488 2-dehydro-3-deoxygluconokinase.
 
   
 0.652
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.579
Cphy_0054
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: tde:TDE0157 KHG/KDPG family aldolase/carbohydrate kinase, PfkB family.
 
  
 0.547
Cphy_0203
PFAM: glycosyl hydrolase family 88; KEGG: amt:Amet_0895 glycosyl hydrolase, family 88.
 
    0.535
Cphy_2737
PFAM: glycosyl hydrolase family 88; KEGG: amt:Amet_0895 glycosyl hydrolase, family 88.
 
    0.526
Cphy_2736
PFAM: glycoside hydrolase family 28; KEGG: amt:Amet_0899 glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family.
 
     0.488
Cphy_0227
PFAM: PfkB domain protein; KEGG: amt:Amet_1262 PfkB domain protein.
 
   
 0.467
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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