Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_2757PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: cth:Cthe_3039 cell divisionFtsK/SpoIIIE. (946 aa)    
Predicted Functional Partners:
Cphy_3934
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cbh:CLC_3637 stage 0 sporulation protein J; Belongs to the ParB family.
  
  
 0.825
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
  
 0.755
Cphy_2472
KEGG: cbh:CLC_1498 cell division protein FtsQ.
   
 
 0.702
Cphy_1957
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; KEGG: bce:BC4322 ComE operon protein 3.
 
  
 0.699
Cphy_3935
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: tte:TTE2791 ATPases involved in chromosome partitioning.
  
  
 0.688
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
   
 0.676
ispH
Hydroxymethylbutenyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
 
  
 0.650
Cphy_2474
PFAM: cell cycle protein; KEGG: csc:Csac_0924 cell division protein FtsW; Belongs to the SEDS family.
 
  
 0.649
Cphy_0335
KEGG: tte:TTE1818 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein.
  
  
 0.631
nusG
NusG antitermination factor; Participates in transcription elongation, termination and antitermination.
  
    0.627
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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