Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Cphy_2781Hypothetical protein. (757 aa)    
Predicted Functional Partners:
Cphy_3888
Chromosome segregation ATPase-like protein; KEGG: cpr:CPR_0357 hypothetical protein.
  
     0.725
Cphy_3869
PFAM: Fibronectin type III domain protein; KEGG: bha:BH0494 exopolygalacturonate lyase.
 
   
 0.572
Cphy_2780
PFAM: Rubrerythrin; KEGG: cdf:CD2845 rubrerythrin.
  
    0.440
Cphy_0360
Hypothetical protein; KEGG: cac:CAC2733 uncharacterized conserved membrane protein.
  
     0.439
Cphy_3689
PFAM: major facilitator superfamily MFS_1; KEGG: amt:Amet_3781 major facilitator superfamily MFS_1.
 
     0.431
Cphy_2733
PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3316 extracellular solute-binding protein, family 1.
  
    0.415
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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