STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2793PFAM: RelA/SpoT domain protein; KEGG: amt:Amet_3678 RelA/SpoT domain protein. (267 aa)    
Predicted Functional Partners:
Cphy_0548
(p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
    
0.918
Cphy_0020
PFAM: RelA/SpoT domain protein; KEGG: lin:lin0794 hypothetical protein.
  
  
 
0.916
Cphy_0132
TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: chy:CHY_0204 tetrapyrrole methylase family protein/MazG family protein.
    
  0.902
Cphy_0535
TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; KEGG: tde:TDE1331 anaerobic ribonucleoside triphosphate reductase.
     
  0.900
Cphy_0825
PFAM: adenylate cyclase; KEGG: pdi:BDI_3761 hypothetical protein.
     
  0.900
Cphy_3050
KEGG: cvi:CV_2412 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: formate C-acetyltransferase glycine radical; ATP-cone domain protein.
     
  0.900
Cphy_2794
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cno:NT01CX_0361 cell envelope-related transcriptional attenuator, putative.
 
     0.806
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
     
  0.800
Cphy_2334
PFAM: GTP cyclohydrolase I; KEGG: cac:CAC3626 GTP cyclohydrolase I; Belongs to the GTP cyclohydrolase I family.
     
  0.800
Cphy_2792
PFAM: Fmu (Sun) domain protein; KEGG: cth:Cthe_3160 putative RNA methylase, NOL1/NOP2/sun family.
 
     0.731
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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