STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2810PFAM: glycosyl transferase family 2; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: amt:Amet_3406 glycosyl transferase, family 2. (356 aa)    
Predicted Functional Partners:
Cphy_2811
PFAM: glycosyl transferase group 1; TPR repeat-containing protein; KEGG: dsy:DSY4437 hypothetical protein.
 
  
0.703
Cphy_3262
PFAM: Collagen triple helix repeat; KEGG: bat:BAS1130 hypothetical protein.
  
     0.681
Cphy_2814
PFAM: glycosyl transferase family 2; Methyltransferase type 11; Methyltransferase type 12; KEGG: cbe:Cbei_2586 glycosyl transferase, family 2.
  
 0.576
Cphy_2809
Chromosome segregation ATPase-like protein; KEGG: bps:BPSS1434 membrane-anchored cell surface protein.
  
    0.502
Cphy_1694
PFAM: Collagen triple helix repeat; KEGG: mlo:mlr0587 hypothetical glycine-rich protein.
 
     0.467
Cphy_1201
KEGG: spd:SPD_0319 undecaprenylphosphate glucosephosphotransferase Cps2E; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.449
Cphy_3542
KEGG: dsy:DSY3322 hypothetical protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.449
Cphy_1098
PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cpf:CPF_0767 iron-sulfur cluster-binding protein, rieske family.
  
    0.400
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.