STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2815PFAM: Rubrerythrin; KEGG: cac:CAC3002 uncharacterized consrved protein, YHJR B.subtilis family. (186 aa)    
Predicted Functional Partners:
Cphy_2816
KEGG: cbf:CLI_0985 hypothetical protein.
 
     0.656
Cphy_1155
PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: cpe:CPE1368 hypothetical protein.
  
     0.612
Cphy_1208
PFAM: O-antigen polymerase; KEGG: bca:BCE_5389 O-antigen polymerase (wzy).
  
     0.599
Cphy_1157
PFAM: nucleic acid binding OB-fold tRNA/helicase-type; SMART: Ig domain protein group 2 domain protein; KEGG: cpe:CPE1368 hypothetical protein.
  
     0.596
Cphy_3570
Hypothetical protein; KEGG: bcl:ABC1144 sugar ABC transporter substrate-binding protein.
  
     0.571
Cphy_0805
PFAM: extracellular solute-binding protein family 5; KEGG: bcy:Bcer98_0219 extracellular solute-binding protein family 5.
  
    0.563
Cphy_1004
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: sgo:SGO_1596 transcription regulator.
  
     0.539
Cphy_0804
KEGG: mac:MA3471 hypothetical protein.
  
     0.527
Cphy_3558
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cno:NT01CX_1854 pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
  
 0.527
Cphy_2806
KEGG: cbf:CLI_0985 hypothetical protein.
 
     0.510
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.