STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2816KEGG: cbf:CLI_0985 hypothetical protein. (123 aa)    
Predicted Functional Partners:
Cphy_2815
PFAM: Rubrerythrin; KEGG: cac:CAC3002 uncharacterized consrved protein, YHJR B.subtilis family.
 
     0.656
Cphy_1208
PFAM: O-antigen polymerase; KEGG: bca:BCE_5389 O-antigen polymerase (wzy).
  
     0.602
Cphy_3570
Hypothetical protein; KEGG: bcl:ABC1144 sugar ABC transporter substrate-binding protein.
  
     0.571
Cphy_1004
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: sgo:SGO_1596 transcription regulator.
  
     0.520
Cphy_1063
Conserved hypothetical protein; KEGG: bth:BT_0447 S-layer related protein precursor, sialic acid-specific 9-O-acetylesterase.
  
     0.496
Cphy_2029
Hypothetical protein; KEGG: amt:Amet_3803 copper amine oxidase domain protein.
  
     0.494
Cphy_1089
PFAM: extracellular solute-binding protein family 1; KEGG: dsy:DSY1083 hypothetical protein.
  
     0.489
Cphy_0658
KEGG: pmy:Pmen_4204 hypothetical protein.
  
     0.488
Cphy_3563
KEGG: bth:BT_0449 conserved hypothetical protein, putative S-layer related protein precursor.
  
     0.457
Cphy_1207
KEGG: pdi:BDI_0432 putative hexapeptide transferase family protein.
  
     0.450
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.