STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2817PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpf:CPF_2886 serine protease C. (538 aa)    
Predicted Functional Partners:
Cphy_0539
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cdf:CD0551 putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase).
 
    0.783
Cphy_2522
KEGG: cdf:CD1194 stage III sporulation protein AC.
  
     0.766
Cphy_0349
Hypothetical protein.
  
     0.758
Cphy_3425
Hypothetical protein.
  
     0.757
Cphy_3435
KEGG: cdf:CD2800 hypothetical protein.
  
     0.747
Cphy_3794
PFAM: Peptidoglycan-binding LysM; KEGG: cth:Cthe_2402 peptidoglycan-binding LysM.
  
  
 0.737
Cphy_0051
PFAM: Peptidoglycan-binding LysM; KEGG: rca:Rcas_0063 peptidoglycan-binding LysM.
  
    0.722
Cphy_3824
TIGRFAM: spore coat protein, CotS family; KEGG: ctc:CTC00273 spore coat protein.
  
     0.714
Cphy_2316
PFAM: Stage II sporulation P family protein; KEGG: cth:Cthe_1328 stage II sporulation P.
  
     0.692
Cphy_2517
KEGG: cth:Cthe_0838 hypothetical protein.
  
     0.692
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.