STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2818PFAM: cell wall hydrolase/autolysin; KEGG: tte:TTE2424 N-acetylmuramoyl-L-alanine amidase. (191 aa)    
Predicted Functional Partners:
Cphy_0042
PFAM: Rhomboid family protein; KEGG: ctc:CTC00530 conserved membrane protein (rhomboid family).
   
   0.732
Cphy_2817
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpf:CPF_2886 serine protease C.
 
    0.603
Cphy_0068
PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: syn:slr0891 N-acetylmuramoyl-L-alanine amidase.
  
   
 0.574
Cphy_2080
PFAM: cell wall hydrolase/autolysin; KEGG: gtn:GTNG_2805 N-acetylmuramoyl-L-alanine amidase, sporulationmother cell wall hydrolase.
  
     0.515
Cphy_3607
PFAM: peptidase M23B; KEGG: tte:TTE1975 membrane proteins related to metalloendopeptidase.
 
  
 0.413
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.