STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2819PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: tte:TTE1266 leader peptidase (prepilin peptidase) / N-methyltransferase. (251 aa)    
Predicted Functional Partners:
Cphy_1957
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; KEGG: bce:BC4322 ComE operon protein 3.
 
  
 0.793
Cphy_2723
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: gme:Gmet_0890 smf protein.
  
  
 0.726
Cphy_1953
KEGG: csc:Csac_1821 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1.
   
  
 0.668
secF
Protein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
     
 0.635
Cphy_2525
PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: cno:NT01CX_0621 shikimate 5-dehydrogenase.
  
  
 0.576
Cphy_0885
Competence protein-like protein; KEGG: lwe:lwe2206 CoiA-like family protein.
   
  
 0.571
Cphy_2877
TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: ana:alr2975 signal peptidase I; Belongs to the peptidase S26 family.
 
   
 0.537
Cphy_3555
PFAM: beta-lactamase domain protein; KEGG: ctc:CTC00821 ComE-like protein, metallo beta-lactamase superfamily hydrolase.
 
  
 0.524
Cphy_2820
Pyruvate formate-lyase activating enzyme; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.
       0.523
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
  
 0.491
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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