STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2848PFAM: glycoside hydrolase family 4; KEGG: csc:Csac_2748 glycoside hydrolase, family 4. (487 aa)    
Predicted Functional Partners:
uxaC
PFAM: Glucuronate isomerase; KEGG: cbe:Cbei_1832 glucuronate isomerase.
    
  0.902
Cphy_3396
Glycoside hydrolase family 4; Alpha-galacturonidase able to catalyze the hydrolysis of the chromogenic substrate p-nitrophenyl-alpha-D-galacturonic acid (pNPalphaGalUA). It is probable that alpha-1,4-di-galacturonate (GalUA(2)) is the naturally occurring substrate.
  
  
 
0.901
Cphy_1169
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: gtn:GTNG_1791 alpha-L-arabinofuranosidase.
  
  
  0.846
Cphy_0191
PFAM: glycoside hydrolase family 43; KEGG: bld:BLi00864 xylan beta-1,4-xylosidase; RBL03427; Belongs to the glycosyl hydrolase 43 family.
     
 0.801
Cphy_0875
PFAM: glycoside hydrolase family 43; KEGG: bld:BLi00864 xylan beta-1,4-xylosidase; RBL03427.
     
 0.801
Cphy_2028
PFAM: glycoside hydrolase family 43; Glycosyl hydrolase family 32 domain protein; KEGG: sco:SCO0118 xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
     
 0.801
Cphy_3011
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: oih:OB2087 arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
     
 0.801
Cphy_3398
PFAM: glycoside hydrolase family 43; KEGG: bha:BH3683 xylan beta-1,4-xylosidase; Belongs to the glycosyl hydrolase 43 family.
     
 0.801
Cphy_1210
Nucleotide sugar dehydrogenase; KEGG: drm:Dred_3027 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.
     
  0.800
Cphy_1768
KEGG: cbe:Cbei_0751 PTS system, glucose subfamily, IIA subunit; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC.
  
  
 0.763
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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