STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2859PFAM: helix-turn-helix domain protein; KEGG: btk:BT9727_1061 probable transcriptional regulator. (316 aa)    
Predicted Functional Partners:
Cphy_0917
KEGG: cbh:CLC_1692 hypothetical protein.
  
     0.766
Cphy_0927
KEGG: cbh:CLC_1692 hypothetical protein.
  
     0.766
Cphy_1308
PFAM: APHP domain protein; KEGG: fjo:Fjoh_3203 Ig domain protein, group 2 domain protein.
  
     0.761
Cphy_0676
Hypothetical protein; KEGG: bcz:BCZK1145 acetyltransferase, GNAT family.
  
     0.731
Cphy_1505
KEGG: amt:Amet_4319 hypothetical protein.
  
     0.728
Cphy_0509
Membrane protein; KEGG: cac:CAC1316 predicted membrane protein.
  
     0.722
Cphy_3888
Chromosome segregation ATPase-like protein; KEGG: cpr:CPR_0357 hypothetical protein.
  
    0.663
Cphy_3145
PFAM: integrase family protein; KEGG: tte:TTE2127 integrase; Belongs to the 'phage' integrase family.
  
    0.622
Cphy_1506
PFAM: NUDIX hydrolase; KEGG: mma:MM_2810 hypothetical protein.
  
     0.615
Cphy_3125
PFAM: GCN5-related N-acetyltransferase; KEGG: bld:BLi02251 hypothetical protein.
  
    0.603
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.