STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2882KEGG: cbe:Cbei_2464 putative GTPase (G3E family)-like protein. (318 aa)    
Predicted Functional Partners:
Cphy_2883
PFAM: cobalamin synthesis protein P47K; KEGG: cbe:Cbei_2463 cobalamin synthesis protein, P47K.
 
    
0.696
Cphy_1115
KEGG: cbf:CLI_0591 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like.
  
     0.500
Cphy_2881
PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: cpr:CPR_1721 conserved hypothetical protein TIGR00255.
       0.417
Cphy_2880
PFAM: protein of unknown function DUF370; KEGG: bay:RBAM_015500 YlzA; Belongs to the RemA family.
       0.410
Cphy_0501
KEGG: pdi:BDI_1526 hypothetical protein.
  
     0.402
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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