STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2891PFAM: Dak phosphatase; KEGG: amt:Amet_2771 Dak phosphatase. (560 aa)    
Predicted Functional Partners:
Cphy_2554
TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: csc:Csac_1297 DegV family protein.
 
 0.989
Cphy_2892
PFAM: protein of unknown function DUF322; KEGG: oih:OB1515 hypothetical protein.
 
  
 0.989
Cphy_3275
TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cpf:CPF_0030 DegV family protein.
   0.941
Cphy_3161
TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: ckl:CKL_2513 hypothetical protein.
 
 0.935
Cphy_0869
TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cpe:CPE0026 hypothetical protein.
   0.931
Cphy_3343
TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: ctc:CTC02002 DegV protein.
   0.901
Cphy_3344
PFAM: DegV family protein; KEGG: cno:NT01CX_0895 DegV family protein, putative.
 
 0.900
Cphy_0094
PFAM: DegV family protein; KEGG: oih:OB2518 hypothetical protein.
 
 
 0.894
Cphy_1558
PFAM: DegV family protein; KEGG: dsy:DSY0636 hypothetical protein.
   0.857
Cphy_2516
PFAM: protein of unknown function DUF322; KEGG: amt:Amet_2500 protein of unknown function DUF322.
 
  
 0.536
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.