STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2904PFAM: protein of unknown function DUF925; KEGG: cps:CPS_3132 hypothetical protein. (199 aa)    
Predicted Functional Partners:
Cphy_2165
KEGG: cbe:Cbei_3228 hypothetical protein.
  
     0.481
Cphy_1872
Putative homoserine kinase type II (protein kinase fold)-like protein; KEGG: btk:BT9727_0548 hypothetical protein.
  
    0.433
Cphy_2553
KEGG: mac:MA2899 hypothetical protein.
  
    0.431
Cphy_2903
KEGG: csc:Csac_2251 histidinol phosphate phosphatase HisJ family; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; Belongs to the PHP hydrolase family. HisK subfamily.
       0.428
Cphy_0657
PFAM: regulatory protein TetR; KEGG: tde:TDE0332 transcriptional regulator, TetR family.
  
     0.426
Cphy_3135
PFAM: GCN5-related N-acetyltransferase; KEGG: tth:TTC0848 acetyltransferase.
  
     0.406
Cphy_2164
Hypothetical protein.
  
     0.402
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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