STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2912Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: dsy:DSY3594 hypothetical protein. (200 aa)    
Predicted Functional Partners:
Cphy_0083
PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin.
 
  
 0.718
Cphy_2913
KEGG: dsy:DSY3591 hypothetical protein.
 
    0.693
Cphy_1570
Ferritin Dps family protein; Iron-storage protein.
  
  
 0.647
Cphy_3470
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: drm:Dred_2967 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
  
  
 0.612
Cphy_0262
PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dps:DP1647 flavoprotein.
 
  
 0.584
Cphy_1967
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: dsy:DSY1949 hypothetical protein.
  
     0.536
Cphy_3786
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_3119 flavin reductase-like, FMN-binding.
  
  
 0.515
Cphy_0603
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cdf:CD2682 pyruvate-flavodoxin oxidoreductase.
  
  
 0.507
Cphy_0463
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
  
 0.471
Cphy_0065
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: cpe:CPE0727 hypothetical protein.
  
     0.457
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.