STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Cphy_2915PFAM: amine oxidase; KEGG: cbe:Cbei_4105 amine oxidase. (564 aa)    
Predicted Functional Partners:
Cphy_3925
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase_; KEGG: cth:Cthe_0423 iron-containing alcohol dehydrogenase.
  
 0.918
Cphy_0958
PFAM: Aldehyde Dehydrogenase_; KEGG: cbe:Cbei_0729 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.911
Cphy_3041
PFAM: Aldehyde Dehydrogenase_; KEGG: tde:TDE2512 aldehyde dehydrogenase (NADP) family protein; Belongs to the aldehyde dehydrogenase family.
   
 0.911
Cphy_2218
Acetyltransferase; KEGG: btk:pBT9727_0044 acetyltransferase.
    
  0.902
Cphy_3809
PFAM: GCN5-related N-acetyltransferase; KEGG: bat:BAS3058 spermine/spermidine acetyltransferase, putative.
    
  0.902
Cphy_1663
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bld:BLi04061 YwbC.
  
 
 0.829
Cphy_2116
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cbf:CLI_2228 glyoxalase family protein.
  
 
 0.825
Cphy_0469
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dsy:DSY4986 hypothetical protein.
   
 
 0.802
Cphy_1852
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cdf:CD3610 putative glyoxalase.
   
 
 0.802
Cphy_2631
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lmf:LMOf2365_0426 glyoxalase family protein.
   
 
 0.802
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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