STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2939PFAM: band 7 protein; KEGG: fnu:FN1549 stomatin like protein. (312 aa)    
Predicted Functional Partners:
Cphy_2940
PFAM: protein of unknown function DUF107; KEGG: aau:AAur_2191 putative integral membrane protein.
 
  
 0.960
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.766
ftsH-2
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.766
ftsH-3
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; In the central section; belongs to the AAA ATPase family.
   
 0.766
Cphy_2937
PFAM: ATP-binding region ATPase domain protein; KEGG: amt:Amet_0102 signal transduction histidine kinase regulating citrate/malate metabolism.
       0.658
Cphy_2938
PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: amt:Amet_3563 two component transcriptional regulator, LytTR family.
       0.656
Cphy_2761
PFAM: peptidase M16 domain protein; KEGG: cth:Cthe_0419 peptidase M16-like protein.
  
 0.593
Cphy_0265
KEGG: sbl:Sbal_2840 hypothetical protein.
   
 0.582
Cphy_0042
PFAM: Rhomboid family protein; KEGG: ctc:CTC00530 conserved membrane protein (rhomboid family).
   
 0.466
Cphy_1512
PFAM: Rhomboid family protein; KEGG: cth:Cthe_0259 rhomboid-like protein.
   
 0.466
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.