STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2940PFAM: protein of unknown function DUF107; KEGG: aau:AAur_2191 putative integral membrane protein. (146 aa)    
Predicted Functional Partners:
Cphy_2939
PFAM: band 7 protein; KEGG: fnu:FN1549 stomatin like protein.
 
 
 0.969
cobS
Cobalamin-5-phosphate synthase CobS; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
   
    0.892
Cphy_1379
TIGRFAM: precorrin-6x reductase; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Precorrin-6x reductase CbiJ/CobK; KEGG: ctc:CTC00734 precorrin-6B methylase/decarboxylase cbiT/cbiE.
  
    0.768
Cphy_2937
PFAM: ATP-binding region ATPase domain protein; KEGG: amt:Amet_0102 signal transduction histidine kinase regulating citrate/malate metabolism.
 
     0.709
Cphy_2938
PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: amt:Amet_3563 two component transcriptional regulator, LytTR family.
 
     0.695
Cphy_3821
Band 7 protein; HflC and HflK could regulate a protease.
 
 
 0.658
Cphy_1144
PFAM: band 7 protein; KEGG: amt:Amet_2170 band 7 protein.
  
  
 0.655
Cphy_2023
PFAM: band 7 protein; KEGG: mlo:mll0592 hypothetical protein.
  
  
 0.655
Cphy_3822
HflK protein; HflC and HflK could encode or regulate a protease.
 
 
 0.593
Cphy_1632
KEGG: ctc:CTC02460 ATP-dependent DNA helicase rep.
   
    0.505
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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