STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2944KEGG: dsy:DSY4643 hypothetical protein. (225 aa)    
Predicted Functional Partners:
Cphy_2945
TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; KEGG: cth:Cthe_1704 toxin secretion/phage lysis holin.
  
    0.773
Cphy_2955
KEGG: cbo:CBO1737 phage protein.
 
   0.684
Cphy_2951
KEGG: cdf:CD2901 phage protein.
 
   0.601
Cphy_2954
PFAM: Peptidoglycan-binding LysM; KEGG: cdf:CD2904 putative phage cell wall hydrolase.
 
 
 
 0.579
Cphy_2952
KEGG: dsy:DSY3951 hypothetical protein.
 
    0.568
Cphy_2993
KEGG: lsl:LSL_1861 putative phage-related DNA binding protein.
      
 0.568
Cphy_2949
KEGG: cdf:CD2899 phage protein.
  
   0.541
Cphy_2950
PFAM: Baseplate J family protein; KEGG: cdf:CD2900 putative phage tail protein.
   
   0.525
Cphy_1575
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpe:CPE2561 probable Ser-type protease.
   
  
 0.506
Cphy_2953
KEGG: cdf:CD2903 putative phage cell wall hydrolase.
 
     0.504
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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