STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2948KEGG: ckl:CKL_3246 hypothetical protein. (134 aa)    
Predicted Functional Partners:
Cphy_2708
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_0474 protein of unknown function DUF1078-like protein.
   
 
 0.849
Cphy_2954
PFAM: Peptidoglycan-binding LysM; KEGG: cdf:CD2904 putative phage cell wall hydrolase.
  
  
 0.841
Cphy_2950
PFAM: Baseplate J family protein; KEGG: cdf:CD2900 putative phage tail protein.
  
  
 0.822
Cphy_2951
KEGG: cdf:CD2901 phage protein.
  
  
 0.816
Cphy_2719
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_0463 flagellar basal-body rod protein FlgC.
   
 
 0.814
Cphy_2949
KEGG: cdf:CD2899 phage protein.
  
  
 0.811
Cphy_2952
KEGG: dsy:DSY3951 hypothetical protein.
  
  
 0.797
Cphy_2955
KEGG: cbo:CBO1737 phage protein.
       0.791
Cphy_2717
TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; KEGG: csc:Csac_1257 flagellar M-ring protein FliF.
   
 
 0.780
Cphy_2953
KEGG: cdf:CD2903 putative phage cell wall hydrolase.
       0.778
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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