STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2960KEGG: cdf:CD2911 phage protein. (141 aa)    
Predicted Functional Partners:
Cphy_2962
KEGG: cdf:CD2913 phage protein.
 
    0.962
Cphy_2961
KEGG: cdf:CD2912 phage protein.
 
     0.960
Cphy_2958
KEGG: cdf:CD2910 phage protein.
 
     0.951
Cphy_2957
KEGG: cdf:CD2909 phage protein.
 
     0.942
Cphy_2964
KEGG: cbf:CLI_2414 phage coat protein.
 
     0.933
Cphy_2965
KEGG: cno:NT01CX_2174 scaffold protein.
 
     0.933
Cphy_2956
PFAM: XkdN-like protein; KEGG: cdf:CD2908 phage protein.
 
     0.902
Cphy_2952
KEGG: dsy:DSY3951 hypothetical protein.
 
     0.858
Cphy_2953
KEGG: cdf:CD2903 putative phage cell wall hydrolase.
 
     0.858
Cphy_2949
KEGG: cdf:CD2899 phage protein.
 
     0.857
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.