STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2972KEGG: bha:BH3534 hypothetical protein. (190 aa)    
Predicted Functional Partners:
Cphy_2971
TIGRFAM: phage uncharacterized protein; KEGG: cbf:CLI_2421 hypothetical protein.
 
    0.908
Cphy_2970
TIGRFAM: phage portal protein, SPP1 family; PFAM: portal protein SPP1; KEGG: lga:LGAS_0668 phage portal protein, SPP1 GP6-like.
 
  
 0.655
Cphy_2956
PFAM: XkdN-like protein; KEGG: cdf:CD2908 phage protein.
  
  
 0.579
Cphy_2958
KEGG: cdf:CD2910 phage protein.
  
  
 0.554
Cphy_2957
KEGG: cdf:CD2909 phage protein.
  
  
 0.552
Cphy_2961
KEGG: cdf:CD2912 phage protein.
  
    0.539
Cphy_0787
PFAM: XkdN-like protein; KEGG: cdf:CD2908 phage protein.
  
  
 0.513
Cphy_2969
TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7; KEGG: cdf:CD2920 phage protein.
     
 0.509
Cphy_3576
Hypothetical protein; KEGG: lin:lin2245 similar to ABC transporter (membrane protein).
  
     0.492
Cphy_0786
KEGG: cdf:CD2909 phage protein.
  
  
 0.472
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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