STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2988KEGG: sgl:SG0930 hypothetical protein. (238 aa)    
Predicted Functional Partners:
Cphy_2989
Hypothetical protein; KEGG: tva:TVAG_368940 Kelch motif family protein Pfam: RhoGEF Kelch_1 Kelch_2 RNA_polI_A34 U79_P34 TolA DUF1217 PROSITE: PENTAXIN GLU_RICH LYS_RICH DH_2.
 
     0.879
Cphy_2985
PFAM: zinc finger CHC2-family protein; KEGG: ppd:Ppro_0215 zinc finger, CHC2-family protein.
 
 
 
 0.800
Cphy_2987
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cno:NT01CX_0884 single-stranded DNA binding protein.
       0.783
Cphy_2984
KEGG: drm:Dred_2613 superfamily II helicase and inactivated derivatives-like protein.
 
     0.776
Cphy_2991
SMART: metal-dependent phosphohydrolase HD region; KEGG: cac:CAC1938 predicted HD superfamily hydrolase.
       0.762
Cphy_2990
Hypothetical protein.
       0.757
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.743
Cphy_2986
Hypothetical protein.
       0.732
Cphy_0335
KEGG: tte:TTE1818 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein.
   
 
 0.718
priA
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
    
 
 0.685
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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