STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2989Hypothetical protein; KEGG: tva:TVAG_368940 Kelch motif family protein Pfam: RhoGEF Kelch_1 Kelch_2 RNA_polI_A34 U79_P34 TolA DUF1217 PROSITE: PENTAXIN GLU_RICH LYS_RICH DH_2. (369 aa)    
Predicted Functional Partners:
Cphy_2984
KEGG: drm:Dred_2613 superfamily II helicase and inactivated derivatives-like protein.
 
     0.898
Cphy_2988
KEGG: sgl:SG0930 hypothetical protein.
 
     0.879
Cphy_2985
PFAM: zinc finger CHC2-family protein; KEGG: ppd:Ppro_0215 zinc finger, CHC2-family protein.
 
     0.823
Cphy_2991
SMART: metal-dependent phosphohydrolase HD region; KEGG: cac:CAC1938 predicted HD superfamily hydrolase.
       0.798
Cphy_2990
Hypothetical protein.
       0.773
Cphy_2987
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cno:NT01CX_0884 single-stranded DNA binding protein.
       0.769
Cphy_2986
Hypothetical protein.
       0.716
Cphy_2965
KEGG: cno:NT01CX_2174 scaffold protein.
  
     0.521
Cphy_2992
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: oih:OB0045 transcriptional pleiotropic regulator of transition state genes.
       0.485
Cphy_3465
Hypothetical protein; KEGG: sth:STH2197 putative S-layer associated protein.
  
     0.467
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.