STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_2993KEGG: lsl:LSL_1861 putative phage-related DNA binding protein. (72 aa)    
Predicted Functional Partners:
Cphy_2994
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bce:BC3704 LexA repressor.
       0.521
Cphy_1575
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpe:CPE2561 probable Ser-type protease.
      
 0.505
Cphy_2944
KEGG: dsy:DSY4643 hypothetical protein.
      
 0.505
Cphy_2975
KEGG: drm:Dred_2611 hypothetical protein.
      
 0.501
Cphy_2976
Hypothetical protein.
      
 0.501
Cphy_1571
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cac:CAC3245 subtilisin like protease (two fused domains).
      
 0.499
Cphy_1576
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpr:CPR_2070 subtilase family protein.
      
 0.499
Cphy_2995
PFAM: protein of unknown function DUF955.
       0.474
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.