STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Cphy_3002Cell wall hydrolase SleB; PFAM: protein of unknown function DUF1058; cell wall hydrolase SleB; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: cdf:CD3563 putative spore cortex-lytic enzyme. (488 aa)    
Predicted Functional Partners:
Cphy_1886
PFAM: NLP/P60 protein; Peptidoglycan-binding domain 1 protein; KEGG: gtn:GTNG_3106 cell wall lytic activity.
  
  
 0.594
birA
biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.522
Cphy_2396
Protein of unknown function DUF204; Probably functions as a manganese efflux pump.
  
    0.484
Cphy_3003
PFAM: GCN5-related N-acetyltransferase; KEGG: drm:Dred_2229 hypothetical protein.
       0.448
Cphy_0127
TIGRFAM: transcriptional regulator, AbrB family; stage V sporulation protein T; PFAM: SpoVT/AbrB domain protein; KEGG: cpe:CPE2482 stage V sprulation protein T.
  
   
 0.433
Cphy_2061
Hypothetical protein.
  
     0.432
Cphy_0480
TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein; KEGG: amt:Amet_2220 stage V sporulation AD family protein.
  
  
 0.423
Cphy_0479
TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein; KEGG: drm:Dred_1106 SpoVA protein.
  
  
 0.417
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.