STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3003PFAM: GCN5-related N-acetyltransferase; KEGG: drm:Dred_2229 hypothetical protein. (299 aa)    
Predicted Functional Partners:
Cphy_3004
KEGG: dsy:DSY1282 hypothetical protein.
 
     0.930
Cphy_2097
Hypothetical protein.
  
     0.531
Cphy_1645
Hypothetical protein; KEGG: cdf:CD3350 putative glycosyl transferase.
  
     0.476
Cphy_0469
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dsy:DSY4986 hypothetical protein.
  
     0.475
Cphy_3002
Cell wall hydrolase SleB; PFAM: protein of unknown function DUF1058; cell wall hydrolase SleB; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: cdf:CD3563 putative spore cortex-lytic enzyme.
       0.448
Cphy_2096
PFAM: Coat F domain protein; KEGG: amt:Amet_0905 coat F domain protein.
  
     0.416
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.