STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3013PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD3608 ABC transporter, ATP-binding protein. (240 aa)    
Predicted Functional Partners:
Cphy_3012
PFAM: SufBD protein; KEGG: cdf:CD3607 hypothetical protein.
 
 
 0.999
Cphy_2906
TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: nitrogen-fixing NifU domain protein; KEGG: amt:Amet_2454 nitrogen-fixing NifU domain protein.
  
  
 0.878
Cphy_3260
KEGG: cbe:Cbei_1494 hypothetical protein.
  
  
 0.812
Cphy_3014
KEGG: cac:CAC2917 acetyl esterase family enzyme.
       0.773
Cphy_1489
KEGG: tte:TTE2789 selenocysteine lyase; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; glycine hydroxymethyltransferase.
  
  
 0.650
Cphy_1684
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
  
 0.650
Cphy_1701
KEGG: spe:Spro_2493 cysteine desulfurase, SufS subfamily.
  
  
 0.650
Cphy_1753
PFAM: aminotransferase class V; KEGG: cdf:CD3032 putative aminotransferase.
  
  
 0.650
Cphy_2844
Cysteine desulfurase; PFAM: aminotransferase class V; KEGG: cbe:Cbei_0585 cysteine desulfurase.
  
  
 0.650
Cphy_1488
KEGG: cbh:CLC_2789 hypothetical protein.
  
  
 0.602
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.