Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_3024PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: rsh:Rsph17029_1581 PHP C-terminal domain protein. (331 aa)    
Predicted Functional Partners:
Cphy_3023
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: cpe:CPE0324 probable glycosyl hydrolase.
 
     0.800
Cphy_3025
PFAM: major facilitator superfamily MFS_1; KEGG: dps:DP1499 related to glycerol-3-phosphate transporter.
 
    0.690
Cphy_3026
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: rsh:Rsph17029_1581 PHP C-terminal domain protein.
 
    
0.589
Cphy_3027
PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PF00303 putative sugar ABC transporter, substrate-binding protein.
 
     0.564
Cphy_1537
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ctc:CTC00693 conserved protein, endonuclease-like.
 
     0.512
Cphy_3022
PFAM: Heparinase II/III family protein; KEGG: cpr:CPR_0402 hypothetical protein.
       0.462
Cphy_3035
KEGG: dsy:DSY3902 hypothetical protein.
 
     0.428
Cphy_0124
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_5936 xylose isomerase domain protein TIM barrel.
 
     0.413
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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