STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3025PFAM: major facilitator superfamily MFS_1; KEGG: dps:DP1499 related to glycerol-3-phosphate transporter. (422 aa)    
Predicted Functional Partners:
Cphy_3026
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: rsh:Rsph17029_1581 PHP C-terminal domain protein.
 
    0.810
Cphy_3024
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: rsh:Rsph17029_1581 PHP C-terminal domain protein.
 
    0.690
Cphy_2139
PFAM: extracellular solute-binding protein family 1; KEGG: cth:Cthe_1588 extracellular solute-binding protein, family 1.
  
  
 0.683
Cphy_3023
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: cpe:CPE0324 probable glycosyl hydrolase.
 
     0.643
Cphy_1768
KEGG: cbe:Cbei_0751 PTS system, glucose subfamily, IIA subunit; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC.
 
  
 0.626
Cphy_3027
PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PF00303 putative sugar ABC transporter, substrate-binding protein.
 
     0.584
Cphy_1345
PFAM: prephenate dehydratase; Chorismate mutase; KEGG: ckl:CKL_0789 PheA.
   
 
 0.549
Cphy_1970
KEGG: bra:BRADO1315 hypothetical protein; putative signal peptide.
  
  
 0.528
Cphy_2142
KEGG: tde:TDE0186 hypothetical protein.
  
  
 0.528
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.526
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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