STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3028Alpha-L-fucosidase; SMART: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: bvu:BVU_0535 glycoside hydrolase family 29, candidate alpha-L-fucosidase. (470 aa)    
Predicted Functional Partners:
Cphy_0874
KEGG: afm:AFUA_3G12590 conserved hypothetical protein.
 
  0.958
Cphy_1395
KEGG: afm:AFUA_3G12590 conserved hypothetical protein.
 
  0.958
Cphy_3023
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: cpe:CPE0324 probable glycosyl hydrolase.
 
  
0.951
Cphy_2190
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: cpe:CPE0324 probable glycosyl hydrolase.
 
  
0.937
Cphy_3029
PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 putative unsaturated glucuronyl hydrolase.
 
     0.767
Cphy_3030
Conserved hypothetical protein; Reversibly phosphorolyzes beta-D-galactopyranosyl-(1->3)-N- acetyl-D-glucosamine to form alpha-D-galactopyranose 1-phosphate and acetyl-D-glucosamine. Active towards galacto-N-biose and lacto-N-biose. Does not phosphorolyze galacto-N-tetraose or lacto-N-tetraose. In the reverse reaction has activity toward N-acetyl-D-glucosamine and N- acetyl-D-galactosamine, but not L-rhamnose, D-glucose or D-galactose.
 
   
 0.653
Cphy_3217
PFAM: glycoside hydrolase family 28; KEGG: fjo:Fjoh_3114 glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family.
  
   
 0.619
Cphy_1711
Endopygalactorunase-like protein; KEGG: bvu:BVU_0121 glycoside hydrolase family 28; Belongs to the glycosyl hydrolase 28 family.
  
   
 0.610
Cphy_3081
PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: bfr:BF1741 putative beta-galactosidase.
 
   
 0.532
Cphy_1719
PFAM: conserved hypothetical protein; KEGG: bha:BH0790 hypothetical protein.
 
   
 0.517
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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